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  5. Solyc01g006100.4.1

Solyc01g006100.4.1 (CMT3, Solyc01g006100)


Aliases : CMT3, Solyc01g006100

Description : DNA chromomethylase (CMT)


Gene families : OG0002093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002093_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g006100.4.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00193220 CMT3,... Chromatin organisation.DNA methylation.RNA-independent... 0.12 OrthoFinder output from all 47 species
AMTR_s00048p00181490 CMT2,... Chromatin organisation.DNA methylation.RNA-independent... 0.02 OrthoFinder output from all 47 species
AT1G69770 CMT3 chromomethylase 3 0.04 OrthoFinder output from all 47 species
Adi_g014234 CMT2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g060185 CMT3 DNA chromomethylase *(CMT) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g089629 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g07783 CMT3 DNA chromomethylase *(CMT) & original description: none 0.08 OrthoFinder output from all 47 species
Als_g09491 CMT3 DNA chromomethylase *(CMT) & original description: none 0.08 OrthoFinder output from all 47 species
Als_g30424 CMT3 DNA chromomethylase *(CMT) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g28229 CMT2 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10939 CMT3 DNA chromomethylase *(CMT) & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene20769.t1 CMT3, Aspi01Gene20769 DNA chromomethylase *(CMT) & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene43679.t1 CMT3, Aspi01Gene43679 DNA chromomethylase *(CMT) & original description: none 0.11 OrthoFinder output from all 47 species
Azfi_s0003.g007336 CMT2 DNA chromomethylase *(CMT) & original description: CDS=1-1743 0.05 OrthoFinder output from all 47 species
Azfi_s0028.g023875 CMT3 DNA chromomethylase *(CMT) & original description: CDS=5-2743 0.09 OrthoFinder output from all 47 species
Ceric.12G007000.1 CMT3, Ceric.12G007000 DNA chromomethylase *(CMT) & original description:... 0.17 OrthoFinder output from all 47 species
Ceric.34G031800.1 CMT3, Ceric.34G031800 DNA chromomethylase *(CMT) & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g12073 CMT3 DNA chromomethylase *(CMT) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g46826 CMT3 DNA chromomethylase *(CMT) & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g50047 CMT2 DNA chromomethylase *(CMT) & original description: none 0.1 OrthoFinder output from all 47 species
GSVIVT01024446001 CMT2 Chromatin organisation.DNA methylation.RNA-independent... 0.03 OrthoFinder output from all 47 species
GSVIVT01025386001 CMT3 Chromatin organisation.DNA methylation.RNA-independent... 0.13 OrthoFinder output from all 47 species
GSVIVT01033464001 CMT1, DMT4 Chromatin organisation.DNA methylation.RNA-independent... 0.15 OrthoFinder output from all 47 species
Gb_13672 CMT3 DNA chromomethylase (CMT) 0.09 OrthoFinder output from all 47 species
LOC_Os10g01570.1 CMT3, LOC_Os10g01570 DNA chromomethylase (CMT) 0.23 OrthoFinder output from all 47 species
Len_g07756 CMT3 DNA chromomethylase *(CMT) & original description: none 0.06 OrthoFinder output from all 47 species
Len_g24159 CMT3 DNA chromomethylase *(CMT) & original description: none 0.08 OrthoFinder output from all 47 species
Lfl_g16046 CMT3 DNA chromomethylase *(CMT) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g18656 CMT2 DNA chromomethylase *(CMT) & original description: none 0.1 OrthoFinder output from all 47 species
MA_173651g0010 CMT3 DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa... 0.1 OrthoFinder output from all 47 species
Mp6g08650.1 CMT3 DNA chromomethylase (CMT) 0.1 OrthoFinder output from all 47 species
Msp_g14579 CMT3 DNA chromomethylase *(CMT) & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g39436 CMT3 DNA chromomethylase *(CMT) & original description: none 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0222.g026232 CMT3 DNA chromomethylase *(CMT) & original description: CDS=250-2766 0.07 OrthoFinder output from all 47 species
Spa_g08555 CMT3 DNA chromomethylase *(CMT) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g26095 CMT3 DNA chromomethylase *(CMT) & original description: none 0.13 OrthoFinder output from all 47 species
Spa_g52855 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07640 CMT3 DNA chromomethylase *(CMT) & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g10202 CMT3 DNA chromomethylase *(CMT) & original description: none 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
CC GO:0031390 Ctf18 RFC-like complex IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045005 DNA-templated DNA replication maintenance of fidelity IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048478 replication fork protection IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051053 negative regulation of DNA metabolic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090329 regulation of DNA-templated DNA replication IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
BP GO:2000104 negative regulation of DNA-templated DNA replication IEP HCCA
InterPro domains Description Start Stop
IPR023780 Chromo_domain 357 411
IPR001525 C5_MeTfrase 421 771
IPR001025 BAH_dom 139 246
No external refs found!