Solyc01g005960.3.1 (Solyc01g005960)

Aliases : Solyc01g005960

Description : DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana (sp|q84w89|rh37_arath : 783.0)

Gene families : OG0002081 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002081_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g005960.3.1
Cluster	HCCA: Cluster_88

Target	Alias	Description	ECC score	Gene Family Method
Adi_g103003	No alias	sRNA cargo-loAding helicase *(RH11/37) of extracellular...	0.02	OrthoFinder output from all 47 species
Adi_g103004	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g38858	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g46511	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.03	OrthoFinder output from all 47 species
Aob_g38356	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.04	OrthoFinder output from all 47 species
Azfi_s0011.g012710	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.03	OrthoFinder output from all 47 species
LOC_Os03g59050.1	LOC_Os03g59050	DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
Len_g30354	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.02	OrthoFinder output from all 47 species
Ppi_g29242	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.02	OrthoFinder output from all 47 species
Sam_g15279	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.02	OrthoFinder output from all 47 species
Smo267628	No alias	DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	168	347
IPR001650	Helicase_C	382	497

External Links

No external refs found!