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  5. Solyc01g005480.3.1

Solyc01g005480.3.1 (Solyc01g005480)


Aliases : Solyc01g005480

Description : UPF0496 protein At3g19330 OS=Arabidopsis thaliana (sp|q9lt84|u496m_arath : 199.0)


Gene families : OG0003701 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003701_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g005480.3.1

Target Alias Description ECC score Gene Family Method Actions
AT3G19330 No alias Protein of unknown function (DUF677) 0.03 OrthoFinder output from all 47 species
Ala_g38714 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g60941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.20G084400.1 Ceric.20G084400 not classified & original description: pacid=50567352... 0.05 OrthoFinder output from all 47 species
Msp_g11727 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g40065 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e040818_P001 Zm00001e040818 UPF0496 protein At3g19330 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007749 DUF677 106 366
No external refs found!