Solyc00g500351.1.1 (Solyc00g500351)

Aliases : Solyc00g500351

Description : component mtRPS13|psRPS13 of small ribosomal subunit proteome. component psRPS13|mtRPS13 of small ribosomal subunit proteome

Gene families : OG0010561 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010561_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc00g500351.1.1
Cluster	HCCA: Cluster_1

Target	Alias	Description	ECC score	Gene Family Method
Gb_05018	No alias	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
Gb_17116	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
Pp3c15_6860V3.1	Pp3c15_6860	No annotation	0.02	OrthoFinder output from all 47 species
Pp3c2_23430V3.1	Pp3c2_23430	No annotation	0.02	OrthoFinder output from all 47 species
Solyc01g017250.1.1	ORF199, Solyc01g017250	Protein TIC 214 OS=Nicotiana tomentosiformis...	0.01	OrthoFinder output from all 47 species
Solyc10g018953.1.1	Solyc10g018953	Ribosomal protein S13, mitochondrial OS=Nicotiana...	0.03	OrthoFinder output from all 47 species
Solyc11g045440.1.1	Solyc11g045440	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Zm00001e022678_P001	Zm00001e022678	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0009055	electron transfer activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0017004	cytochrome complex assembly	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	616	718

External Links

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Solyc00g500351.1.1 (Solyc00g500351)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation