Solyc00g500291.1.1 (RPS2, Solyc00g500291)

Aliases : RPS2, Solyc00g500291

Description : component psRPS2 of small ribosomal subunit proteome

Gene families : OG0003809 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003809_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc00g500291.1.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00102p00108730	RPS2,...	30S ribosomal protein S2, chloroplastic OS=Amborella trichopoda	0.08	OrthoFinder output from all 47 species
ATCG00160	RPS2	ribosomal protein S2	0.38	OrthoFinder output from all 47 species
Aev_g16539	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.29	OrthoFinder output from all 47 species
Aev_g39734	No alias	component *(uS2m) of small mitoribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Als_g16619	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aob_g20059	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Azfi_s0026.g023365	RPS2	not classified & original description: CDS=1-585	0.05	OrthoFinder output from all 47 species
Cba_g05041	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Ceric.02G012600.1	RPS2, Ceric.02G012600	not classified & original description: pacid=50585479...	0.12	OrthoFinder output from all 47 species
Ceric.13G052300.1	RPS2, Ceric.13G052300	component *(uS2c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ceric.1Z023000.1	RPS2, Ceric.1Z023000	component *(uS2c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ceric.1Z286900.1	Ceric.1Z286900	component *(uS2m) of small mitoribosomal-subunit...	0.16	OrthoFinder output from all 47 species
Ceric.1Z298500.1	Ceric.1Z298500	component *(uS2m) of small mitoribosomal-subunit...	0.16	OrthoFinder output from all 47 species
Ceric.29G005000.1	RPS2, Ceric.29G005000	not classified & original description: pacid=50624534...	0.1	OrthoFinder output from all 47 species
Ceric.38G010300.1	RPS2, Ceric.38G010300	component *(uS2c) of small plastid ribosomal-subunit...	0.21	OrthoFinder output from all 47 species
Dcu_g24434	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
LOC_Os02g24612.1	RPS2, LOC_Os02g24612	component psRPS2 of small ribosomal subunit proteome	0.33	OrthoFinder output from all 47 species
LOC_Os10g21234.1	RPS2, LOC_Os10g21234	component psRPS2 of small ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
LOC_Os10g38278.1	RPS2, LOC_Os10g38278	component psRPS2 of small ribosomal subunit proteome	0.33	OrthoFinder output from all 47 species
Len_g21426	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Lfl_g12065	No alias	component *(uS2m) of small mitoribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Mp3g24030.1	RPS2	30S ribosomal protein S2, chloroplastic OS=Marchantia...	0.09	OrthoFinder output from all 47 species
Mp8g10410.1	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Msp_g04897	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Nbi_g07949	No alias	component *(uS2m) of small mitoribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Nbi_g38100	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.16	OrthoFinder output from all 47 species
Pir_g08884	RPS2	not classified & original description: none	0.14	OrthoFinder output from all 47 species
Sam_g02919	No alias	component *(uS2c) of small plastid ribosomal-subunit...	0.15	OrthoFinder output from all 47 species
Sam_g10265	No alias	component *(uS2m) of small mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Smo137779	RPS2	Protein biosynthesis.organelle translation...	0.09	OrthoFinder output from all 47 species
Solyc00g500051.1.1	RPS2, Solyc00g500051	component psRPS2 of small ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Tin_g39248	RPS2	component *(uS2c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Zm00001e013128_P001	RPS2, Zm00001e013128	component psRPS2 of small ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Zm00001e042233_P001	RPS2, Zm00001e042233	component psRPS2 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Zm00001e042360_P001	RPS2, Zm00001e042360	component psRPS2 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Zm00001e042428_P001	RPS2, Zm00001e042428	component psRPS2 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0017004	cytochrome complex assembly	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001865	Ribosomal_S2	13	222

External Links

No external refs found!

Solyc00g500291.1.1 (RPS2, Solyc00g500291)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation