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  5. Solyc00g500275.1.1

Solyc00g500275.1.1 (COX2, Solyc00g500275)


Aliases : COX2, Solyc00g500275

Description : Cytochrome c oxidase subunit 2 OS=Beta vulgaris (sp|p98012|cox2_betvu : 217.0)


Gene families : OG0003824 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003824_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc00g500275.1.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s04574p00000060 evm_27.TU.AmTr_v1... Cytochrome c oxidase subunit 2 OS=Triticum aestivum 0.04 OrthoFinder output from all 47 species
AMTR_s04574p00001800 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s05659p00000220 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s05659p00002430 evm_27.TU.AmTr_v1... Cytochrome c oxidase subunit 2 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
ATMG00160 COX2 cytochrome oxidase 2 0.09 OrthoFinder output from all 47 species
ATMG01280 ORF291 Cytochrome C oxidase subunit II-like, transmembrane domain 0.11 OrthoFinder output from all 47 species
Aop_g31753 COX2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.1Z125800.1 Ceric.1Z125800 not classified & original description: pacid=50604566... 0.05 OrthoFinder output from all 47 species
Ceric.1Z126200.1 COX2, Ceric.1Z126200 not classified & original description: pacid=50604572... 0.07 OrthoFinder output from all 47 species
Ceric.1Z257900.1 COX2, Ceric.1Z257900 not classified & original description: pacid=50586471... 0.06 OrthoFinder output from all 47 species
Ceric.1Z261900.1 COX2, Ceric.1Z261900 not classified & original description: pacid=50628405... 0.08 OrthoFinder output from all 47 species
Ceric.1Z314100.1 Ceric.1Z314100 not classified & original description: pacid=50567672... 0.05 OrthoFinder output from all 47 species
Ceric.1Z318500.1 Ceric.1Z318500 not classified & original description: pacid=50579280... 0.05 OrthoFinder output from all 47 species
Cre03.g154350 COX2 Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dde_g09391 COX2 component *(COX2) of cytochrome c oxidase complex &... 0.02 OrthoFinder output from all 47 species
GSVIVT01006909001 COX2 Cytochrome c oxidase subunit 2 OS=Glycine max 0.07 OrthoFinder output from all 47 species
Gb_08948 COX2 Cytochrome c oxidase subunit 2 OS=Beta vulgaris... 0.1 OrthoFinder output from all 47 species
Gb_17977 COX2 Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Gb_34804 No alias Cytochrome c oxidase subunit 2 OS=Glycine max... 0.08 OrthoFinder output from all 47 species
MA_10436044g0020 COX2 Cytochrome c oxidase subunit 2 OS=Beta vulgaris... 0.03 OrthoFinder output from all 47 species
Mp4g18480.1 No alias Cytochrome c oxidase subunit 2 OS=Marchantia polymorpha... 0.05 OrthoFinder output from all 47 species
Nbi_g26482 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Pir_g05198 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g61967 COX2 component *(COX2) of cytochrome c oxidase complex &... 0.03 OrthoFinder output from all 47 species
Solyc03g063780.1.1 RPL16, Solyc03g063780 60S ribosomal protein L16, mitochondrial OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Spa_g21715 COX2 not classified & original description: none 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0022900 electron transport chain IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR011759 Cyt_c_oxidase_su2_TM_dom 17 103
No external refs found!