1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc00g500260.1.1

Solyc00g500260.1.1 (Solyc00g500260)


Aliases : Solyc00g500260

Description : cytochrome b component of cytochrome c reductase complex. component mtRPL5 of large ribosomal subunit proteome


Gene families : OG0002807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002807_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc00g500260.1.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00034p00187470 evm_27.TU.AmTr_v1... Cytochrome b OS=Marchantia polymorpha 0.06 OrthoFinder output from all 47 species
AT2G07727 No alias Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal 0.15 OrthoFinder output from all 47 species
ATCG00720 PETB photosynthetic electron transfer B 0.06 OrthoFinder output from all 47 species
Aev_g24354 No alias apocytochrome b component of cytochrome c reductase... 0.11 OrthoFinder output from all 47 species
Aev_g27762 PETB apocytochrome b component *(PetB) of cytochrome b6/f... 0.1 OrthoFinder output from all 47 species
Ala_g35856 No alias apocytochrome b component of cytochrome c reductase... 0.04 OrthoFinder output from all 47 species
Als_g39169 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aob_g16275 No alias apocytochrome b component of cytochrome c reductase... 0.07 OrthoFinder output from all 47 species
Aop_g43076 No alias apocytochrome b component of cytochrome c reductase... 0.06 OrthoFinder output from all 47 species
Azfi_s0264.g060907 No alias not classified & original description: CDS=1-306 0.03 OrthoFinder output from all 47 species
Cba_g67442 No alias apocytochrome b component of cytochrome c reductase... 0.07 OrthoFinder output from all 47 species
Ceric.05G041700.1 PETB, Ceric.05G041700 not classified & original description: pacid=50577646... 0.07 OrthoFinder output from all 47 species
Ceric.05G044900.1 PETB, Ceric.05G044900 not classified & original description: pacid=50577209... 0.03 OrthoFinder output from all 47 species
Ceric.05G051500.1 PETB, Ceric.05G051500 not classified & original description: pacid=50578079... 0.05 OrthoFinder output from all 47 species
Ceric.1Z190500.1 Ceric.1Z190500 not classified & original description: pacid=50582113... 0.08 OrthoFinder output from all 47 species
Ceric.1Z200500.1 Ceric.1Z200500 not classified & original description: pacid=50618881... 0.1 OrthoFinder output from all 47 species
Ceric.1Z276900.1 Ceric.1Z276900 not classified & original description: pacid=50569323... 0.1 OrthoFinder output from all 47 species
Ceric.1Z297500.1 Ceric.1Z297500 not classified & original description: pacid=50597032... 0.1 OrthoFinder output from all 47 species
Ceric.1Z311700.1 Ceric.1Z311700 not classified & original description: pacid=50567778... 0.1 OrthoFinder output from all 47 species
Ceric.29G003700.1 PETB, Ceric.29G003700 not classified & original description: pacid=50624590... 0.05 OrthoFinder output from all 47 species
Ceric.36G044700.1 PETB, Ceric.36G044700 not classified & original description: pacid=50568540... 0.09 OrthoFinder output from all 47 species
Ceric.38G008400.1 PETB, Ceric.38G008400 not classified & original description: pacid=50579337... 0.07 OrthoFinder output from all 47 species
Dcu_g39082 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g47960 No alias apocytochrome b component of cytochrome c reductase... 0.04 OrthoFinder output from all 47 species
GSVIVT01012279001 No alias Cytochrome b OS=Zea mays 0.04 OrthoFinder output from all 47 species
GSVIVT01018702001 No alias Cytochrome b OS=Zea mays 0.03 OrthoFinder output from all 47 species
Gb_16762 No alias cytochrome b component of cytochrome c reductase complex 0.12 OrthoFinder output from all 47 species
Gb_17283 No alias Cytochrome b6 OS=Welwitschia mirabilis... 0.09 OrthoFinder output from all 47 species
Gb_20951 No alias Cytochrome b OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os01g57942.1 PETB, LOC_Os01g57942 apocytochrome b component PetB of cytochrome b6/f complex 0.07 OrthoFinder output from all 47 species
LOC_Os04g16846.1 PETB, LOC_Os04g16846 apocytochrome b component PetB of cytochrome b6/f complex 0.07 OrthoFinder output from all 47 species
LOC_Os10g21324.1 PETB, LOC_Os10g21324 apocytochrome b component PetB of cytochrome b6/f complex 0.07 OrthoFinder output from all 47 species
Len_g40106 No alias apocytochrome b component of cytochrome c reductase... 0.02 OrthoFinder output from all 47 species
MA_10392603g0010 No alias Cytochrome b OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp1g00740.1 PETB Cytochrome b6 OS=Marchantia polymorpha... 0.06 OrthoFinder output from all 47 species
Nbi_g20498 No alias apocytochrome b component of cytochrome c reductase... 0.13 OrthoFinder output from all 47 species
Ore_g00397 PETB apocytochrome b component *(PetB) of cytochrome b6/f... 0.05 OrthoFinder output from all 47 species
Pir_g06448 No alias apocytochrome b component of cytochrome c reductase... 0.03 OrthoFinder output from all 47 species
Sam_g14362 No alias apocytochrome b component of cytochrome c reductase... 0.08 OrthoFinder output from all 47 species
Sam_g20641 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo137714 PETB Cytochrome b6 OS=Pinus thunbergii 0.02 OrthoFinder output from all 47 species
Smo139134 No alias Cytochrome b OS=Marchantia polymorpha 0.03 OrthoFinder output from all 47 species
Spa_g23500 No alias apocytochrome b component of cytochrome c reductase... 0.09 OrthoFinder output from all 47 species
Tin_g20386 No alias apocytochrome b component of cytochrome c reductase... 0.04 OrthoFinder output from all 47 species
Zm00001e017084_P001 Zm00001e017084 cytochrome b component of cytochrome c reductase complex 0.04 OrthoFinder output from all 47 species
Zm00001e023252_P001 Zm00001e023252 cytochrome b component of cytochrome c reductase complex 0.04 OrthoFinder output from all 47 species
Zm00001e042242_P001 Zm00001e042242 cytochrome b component of cytochrome c reductase complex 0.04 OrthoFinder output from all 47 species
Zm00001e042335_P001 Zm00001e042335 cytochrome b component of cytochrome c reductase complex 0.04 OrthoFinder output from all 47 species
Zm00001e042463_P001 Zm00001e042463 cytochrome b component of cytochrome c reductase complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005798 Cyt_b/b6_C 801 902
IPR005797 Cyt_b/b6_N 601 747
No external refs found!