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  5. Solyc00g500212.1.1

Solyc00g500212.1.1 (RPS4, Solyc00g500212)


Aliases : RPS4, Solyc00g500212

Description : component psRPS4 of small ribosomal subunit proteome


Gene families : OG0007327 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007327_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc00g500212.1.1

Target Alias Description ECC score Gene Family Method Actions
ATCG00380 RPS4 chloroplast ribosomal protein S4 0.13 OrthoFinder output from all 47 species
Aev_g09926 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g03407 RPS4 component *(uS4c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aob_g03663 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g38513 RPS4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g77949 RPS4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G013600.1 RPS4, Ceric.02G013600 component *(uS4c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ceric.09G048000.1 RPS4, Ceric.09G048000 component *(uS4c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Gb_06832 No alias component psRPS4 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
LOC_Os04g16738.1 RPS4, LOC_Os04g16738 component psRPS4 of small ribosomal subunit proteome 0.13 OrthoFinder output from all 47 species
LOC_Os04g16764.1 RPS4, LOC_Os04g16764 component psRPS4 of small ribosomal subunit proteome 0.13 OrthoFinder output from all 47 species
LOC_Os10g38214.1 RPS4, LOC_Os10g38214 component psRPS4 of small ribosomal subunit proteome 0.13 OrthoFinder output from all 47 species
Nbi_g01687 RPS4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g23778 RPS4 component *(uS4c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Zm00001e003895_P001 RPS4, Zm00001e003895 component psRPS4 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Zm00001e003897_P001 RPS4, Zm00001e003897 component psRPS4 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e003908_P001 RPS4, Zm00001e003908 component psRPS4 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Zm00001e013560_P001 RPS4, Zm00001e013560 component psRPS4 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Zm00001e042033_P001 RPS4, Zm00001e042033 component psRPS4 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Zm00001e042054_P001 RPS4, Zm00001e042054 component psRPS4 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Zm00001e042078_P001 RPS4, Zm00001e042078 component psRPS4 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Zm00001e042098_P001 RPS4, Zm00001e042098 component psRPS4 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Zm00001e042353_P001 RPS4, Zm00001e042353 component psRPS4 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009539 photosystem II reaction center IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 89 136
IPR001912 Ribosomal_S4/S9_N 3 88
No external refs found!