Solyc00g500152.1.1 (RPL2.1, Solyc00g500152)

Aliases : RPL2.1, Solyc00g500152

Description : 50S ribosomal protein L2, chloroplastic OS=Nicotiana sylvestris (sp|q3c1n6|rk2_nicsy : 251.0)

Gene families : OG0002194 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002194_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc00g500152.1.1
Cluster	HCCA: Cluster_158

Target	Alias	Description	ECC score	Gene Family Method
ATCG00830	RPL2.1	ribosomal protein L2	0.02	OrthoFinder output from all 47 species
ATCG01310	RPL2.2	ribosomal protein L2	0.02	OrthoFinder output from all 47 species
Aev_g14432	RPL2.1	component *(uL2c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aev_g24286	No alias	component *(uL2m) of large mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ala_g18429	RPL2.1	component *(uL2c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ala_g38158	No alias	component *(uL2m) of large mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Als_g02447	No alias	component *(uL2m) of large mitoribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.05G042700.1	RPL2.1, Ceric.05G042700	not classified & original description: pacid=50577724...	0.02	OrthoFinder output from all 47 species
Ceric.05G048500.1	RPL2.1, Ceric.05G048500	component *(uL2c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ceric.07G017400.1	RPL2.1, Ceric.07G017400	not classified & original description: pacid=50626616...	0.06	OrthoFinder output from all 47 species
Ceric.09G020100.1	RPL2.1, Ceric.09G020100	not classified & original description: pacid=50586708...	0.03	OrthoFinder output from all 47 species
Ceric.1Z020200.1	RPL2.1, Ceric.1Z020200	not classified & original description: pacid=50586367...	0.04	OrthoFinder output from all 47 species
Ceric.1Z164200.1	RPL2.1, Ceric.1Z164200	not classified & original description: pacid=50596959...	0.04	OrthoFinder output from all 47 species
Ceric.38G057600.1	Ceric.38G057600	not classified & original description: pacid=50579815...	0.04	OrthoFinder output from all 47 species
Gb_17475	RPL2.1	50S ribosomal protein L2, chloroplastic OS=Cycas...	0.03	OrthoFinder output from all 47 species
Gb_20139	RPL2.1	component psRPS11 of small ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Gb_24024	RPL2.1	50S ribosomal protein L2, chloroplastic OS=Cycas...	0.03	OrthoFinder output from all 47 species
Gb_25047	RPL2.1	50S ribosomal protein L2, chloroplastic OS=Cycas...	0.03	OrthoFinder output from all 47 species
Gb_37512	RPL2.1	50S ribosomal protein L2, chloroplastic OS=Cycas...	0.01	OrthoFinder output from all 47 species
Lfl_g13189	RPL2.1	component *(uL2c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
MA_7814449g0010	No alias	60S ribosomal protein L2, mitochondrial OS=Oryza sativa...	0.01	OrthoFinder output from all 47 species
Nbi_g04996	RPL2.1	component *(uL2c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Nbi_g39693	No alias	component *(uL2m) of large mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Pir_g37334	No alias	component *(uL2m) of large mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Solyc02g150102.1.1	RPL2.1, Solyc02g150102	50S ribosomal protein L2, chloroplastic OS=Aethionema...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR022669	Ribosomal_L2_C	1	117

External Links

No external refs found!

Solyc00g500152.1.1 (RPL2.1, Solyc00g500152)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation