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  5. Solyc00g500144.1.1

Solyc00g500144.1.1 (Solyc00g500144)


Aliases : Solyc00g500144

Description : Photosystem I assembly protein Ycf3 OS=Solanum lycopersicum (sp|q2mi99|ycf3_sollc : 91.3)


Gene families : OG0006366 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006366_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc00g500144.1.1

Target Alias Description ECC score Gene Family Method Actions
ATCG00360 YCF3 Tetratricopeptide repeat (TPR)-like superfamily protein 0.13 OrthoFinder output from all 47 species
Aev_g34996 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.23 OrthoFinder output from all 47 species
Als_g33718 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.04 OrthoFinder output from all 47 species
Cba_g70304 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.08 OrthoFinder output from all 47 species
Ceric.02G013500.1 YCF3, Ceric.02G013500 protein involved in PS-I assembly *(YCF3) & original... 0.05 OrthoFinder output from all 47 species
Ceric.09G047900.1 YCF3, Ceric.09G047900 protein involved in PS-I assembly *(YCF3) & original... 0.18 OrthoFinder output from all 47 species
Ceric.1Z022600.1 YCF3, Ceric.1Z022600 protein involved in PS-I assembly *(YCF3) & original... 0.14 OrthoFinder output from all 47 species
Ceric.1Z161500.1 YCF3, Ceric.1Z161500 not classified & original description: pacid=50596948... 0.05 OrthoFinder output from all 47 species
Ceric.26G038300.1 YCF3, Ceric.26G038300 not classified & original description: pacid=50599550... 0.11 OrthoFinder output from all 47 species
Ceric.28G030600.1 YCF3, Ceric.28G030600 not classified & original description: pacid=50569577... 0.07 OrthoFinder output from all 47 species
Ceric.29G032800.1 YCF3, Ceric.29G032800 protein involved in PS-I assembly *(YCF3) & original... 0.22 OrthoFinder output from all 47 species
Ceric.33G023800.1 YCF3, Ceric.33G023800 protein involved in PS-I assembly *(YCF3) & original... 0.07 OrthoFinder output from all 47 species
GSVIVT01016018001 No alias Photosystem I assembly protein Ycf3 OS=Nicotiana tabacum 0.03 OrthoFinder output from all 47 species
LOC_Os01g57966.1 YCF3, LOC_Os01g57966 YCF3 protein involved in PS-I assembly 0.22 OrthoFinder output from all 47 species
LOC_Os04g16736.1 YCF3, LOC_Os04g16736 YCF3 protein involved in PS-I assembly 0.22 OrthoFinder output from all 47 species
LOC_Os04g16762.1 YCF3, LOC_Os04g16762 YCF3 protein involved in PS-I assembly 0.11 OrthoFinder output from all 47 species
LOC_Os10g21254.1 YCF3, LOC_Os10g21254 YCF3 protein involved in PS-I assembly 0.22 OrthoFinder output from all 47 species
LOC_Os10g38216.1 YCF3, LOC_Os10g38216 YCF3 protein involved in PS-I assembly 0.22 OrthoFinder output from all 47 species
Lfl_g14015 YCF3 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Lfl_g19607 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.1 OrthoFinder output from all 47 species
Mp3g09610.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g20105 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.06 OrthoFinder output from all 47 species
Pir_g08805 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.13 OrthoFinder output from all 47 species
Ppi_g12009 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.03 OrthoFinder output from all 47 species
Sam_g21679 No alias protein involved in PS-I assembly *(YCF3) & original... 0.05 OrthoFinder output from all 47 species
Spa_g00949 YCF3 protein involved in PS-I assembly *(YCF3) & original... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0031647 regulation of protein stability IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0042301 phosphate ion binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050821 protein stabilization IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!