Solyc00g500077.1.1 (RPL16, Solyc00g500077)


Aliases : RPL16, Solyc00g500077

Description : 50S ribosomal protein L16, chloroplastic OS=Atropa belladonna (sp|q8s8v6|rk16_atrbe : 206.0)


Gene families : OG0004825 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004825_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc00g500077.1.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s02809p00000680 evm_27.TU.AmTr_v1... 50S ribosomal protein L16, chloroplastic OS=Amborella trichopoda 0.05 OrthoFinder output from all 47 species
ATCG00790 RPL16 ribosomal protein L16 0.09 OrthoFinder output from all 47 species
Aob_g10973 RPL16 component *(uL16m) of large mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aop_g00855 RPL16 component *(uL16m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.05G042300.1 RPL16, Ceric.05G042300 component *(uL16c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.35G023300.1 RPL16, Ceric.35G023300 not classified & original description: pacid=50581973... 0.06 OrthoFinder output from all 47 species
Ceric.38G009100.1 RPL16, Ceric.38G009100 component *(uL16c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cre06.g278224 No alias 60S ribosomal protein L16, mitochondrial OS=Prototheca... 0.03 OrthoFinder output from all 47 species
Gb_40955 RPL16 50S ribosomal protein L16, chloroplastic... 0.04 OrthoFinder output from all 47 species
LOC_Os01g57958.1 LOC_Os01g57958 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.17 OrthoFinder output from all 47 species
LOC_Os04g16826.1 LOC_Os04g16826 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.16 OrthoFinder output from all 47 species
LOC_Os05g22724.1 LOC_Os05g22724 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.1 OrthoFinder output from all 47 species
LOC_Os10g21344.1 LOC_Os10g21344 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.16 OrthoFinder output from all 47 species
LOC_Os12g34056.1 LOC_Os12g34056 component mtRPL16 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Mp1g22400.1 No alias 60S ribosomal protein L16, mitochondrial OS=Marchantia... 0.08 OrthoFinder output from all 47 species
Ore_g00369 RPL16 component *(uL16c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0150.g023360 RPL16 not classified & original description: CDS=1-189 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s3366.g028729 RPL16 component *(uL16c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s3471.g028812 RPL16 component *(uL16c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sam_g33347 No alias component *(uL16m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Solyc06g008140.1.1 RPL16, Solyc06g008140 component mtRPL16 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 2 116
No external refs found!