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  5. Solyc00g500074.1.1

Solyc00g500074.1.1 (RPOA, Solyc00g500074)


Aliases : RPOA, Solyc00g500074

Description : DNA-directed RNA polymerase subunit alpha OS=Solanum tuberosum (sp|q2vee8|rpoa_soltu : 173.0)


Gene families : OG0006820 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006820_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc00g500074.1.1

Target Alias Description ECC score Gene Family Method Actions
ATCG00740 RPOA RNA polymerase subunit alpha 0.07 OrthoFinder output from all 47 species
Aev_g02093 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.05 OrthoFinder output from all 47 species
Aob_g19924 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.07 OrthoFinder output from all 47 species
Cba_g60899 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.05 OrthoFinder output from all 47 species
Ceric.1Z019700.1 RPOA, Ceric.1Z019700 not classified & original description: pacid=50586392... 0.05 OrthoFinder output from all 47 species
Dcu_g20888 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.06 OrthoFinder output from all 47 species
GSVIVT01024860001 RPOA DNA-directed RNA polymerase subunit alpha OS=Vitis vinifera 0.04 OrthoFinder output from all 47 species
Gb_17282 RPOA DNA-directed RNA polymerase subunit alpha OS=Cycas... 0.07 OrthoFinder output from all 47 species
Gb_25929 RPOA DNA-directed RNA polymerase subunit alpha OS=Cycas... 0.08 OrthoFinder output from all 47 species
Gb_36750 RPOA RpoA core component plastid-encoded RNA polymerase 0.07 OrthoFinder output from all 47 species
LOC_Os04g16842.1 RPOA, LOC_Os04g16842 RpoA core component plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
LOC_Os09g07910.1 RPOA, LOC_Os09g07910 DNA-directed RNA polymerase subunit alpha OS=Oryza... 0.06 OrthoFinder output from all 47 species
Lfl_g19118 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.02 OrthoFinder output from all 47 species
Nbi_g19365 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.04 OrthoFinder output from all 47 species
Pir_g12462 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!