Solyc00g500030.1.1 (RPS11, Solyc00g500030)

Aliases : RPS11, Solyc00g500030

Description : component psRPS11 of small ribosomal subunit proteome

Gene families : OG0004584 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004584_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc00g500030.1.1

Target	Alias	Description	ECC score	Gene Family Method
ATCG00750	RPS11	ribosomal protein S11	0.09	OrthoFinder output from all 47 species
Aev_g01915	RPS11	component *(uS11m) of small mitoribosomal-subunit...	0.14	OrthoFinder output from all 47 species
Aev_g37240	RPS11	component *(uS11c) of small plastid ribosomal-subunit...	0.2	OrthoFinder output from all 47 species
Azfi_s0027.g023689	No alias	not classified & original description: CDS=1-321	0.05	OrthoFinder output from all 47 species
Ceric.05G042000.1	RPS11, Ceric.05G042000	component *(uS11c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.05G049400.1	RPS11, Ceric.05G049400	component *(uS11c) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Ceric.1Z122600.1	RPS11, Ceric.1Z122600	not classified & original description: pacid=50617110...	0.08	OrthoFinder output from all 47 species
Ceric.1Z196300.1	RPS11, Ceric.1Z196300	not classified & original description: pacid=50586509...	0.08	OrthoFinder output from all 47 species
Ceric.1Z237100.1	RPS11, Ceric.1Z237100	not classified & original description: pacid=50569351...	0.08	OrthoFinder output from all 47 species
Gb_08606	NFD3	component mtRPS11 of small ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
LOC_Os04g16838.1	RPS11, LOC_Os04g16838	component psRPS11 of small ribosomal subunit proteome	0.22	OrthoFinder output from all 47 species
LOC_Os10g21332.1	RPS11, LOC_Os10g21332	component psRPS11 of small ribosomal subunit proteome	0.22	OrthoFinder output from all 47 species
Mp4g09870.1	No alias	Ribosomal protein S11, mitochondrial OS=Marchantia...	0.11	OrthoFinder output from all 47 species
Mpzg00730.1	No alias	component psRPS11 of small ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
Nbi_g20255	RPS11	component *(uS11m) of small mitoribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Pir_g07424	RPS11	not classified & original description: none	0.13	OrthoFinder output from all 47 species
Tin_g21094	RPS11	component *(uS11m) of small mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001971	Ribosomal_S11	28	137

External Links

No external refs found!

Solyc00g500030.1.1 (RPS11, Solyc00g500030)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation