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  5. Solyc00g500021.1.1

Solyc00g500021.1.1 (PSBE, Solyc00g500021)


Aliases : PSBE, Solyc00g500021

Description : component alpha/PsbE of PS-II cytochrome b559 heterodimer. component beta/PsbF of PS-II cytochrome b559 heterodimer


Gene families : OG0009554 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009554_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc00g500021.1.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00334p00011530 PSBE,... Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.12 OrthoFinder output from all 47 species
ATCG00580 PSBE photosystem II reaction center protein E 0.43 OrthoFinder output from all 47 species
Azfi_s0026.g023366 No alias not classified & original description: CDS=1-432 0.1 OrthoFinder output from all 47 species
Ceric.01G106000.1 PSBE, Ceric.01G106000 component alpha *(PsbE) of PS-II cytochrome b559... 0.02 OrthoFinder output from all 47 species
Ceric.02G014900.1 PSBE, Ceric.02G014900 component *(PsbL) of PS-II complex & original... 0.14 OrthoFinder output from all 47 species
Ceric.05G050500.1 PSBE, Ceric.05G050500 component *(PsbL) of PS-II complex & original... 0.29 OrthoFinder output from all 47 species
Ceric.1Z018800.1 PSBE, Ceric.1Z018800 component alpha *(PsbE) of PS-II cytochrome b559... 0.15 OrthoFinder output from all 47 species
Ceric.30G064400.1 PSBE, Ceric.30G064400 component *(PsbL) of PS-II complex & original... 0.04 OrthoFinder output from all 47 species
Ceric.38G007300.1 PSBE, Ceric.38G007300 component alpha *(PsbE) of PS-II cytochrome b559... 0.15 OrthoFinder output from all 47 species
GSVIVT01027287001 No alias No description available 0.04 OrthoFinder output from all 47 species
LOC_Os06g39728.1 LOC_Os06g39728 component alpha/PsbE of PS-II cytochrome b559 heterodimer 0.35 OrthoFinder output from all 47 species
LOC_Os08g15322.1 LOC_Os08g15322 component alpha/PsbE of PS-II cytochrome b559 heterodimer 0.34 OrthoFinder output from all 47 species
LOC_Os10g21298.1 LOC_Os10g21298 component alpha/PsbE of PS-II cytochrome b559 heterodimer 0.34 OrthoFinder output from all 47 species
Pp3c6_17850V3.1 Pp3c6_17850 photosystem II reaction center protein E 0.01 OrthoFinder output from all 47 species
Smo137822 PSBE Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.25 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR013081 PSII_cyt_b559_N 6 34
IPR013081 PSII_cyt_b559_N 80 97
IPR013082 PSII_cytb559_asu_lum 42 80
No external refs found!