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  5. Smo96251

Smo96251


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL17 component


Gene families : OG0001495 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001495_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo96251
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00159640 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
AMTR_s00013p00211990 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
AMTR_s00013p00223470 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AMTR_s00013p00224030 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
AT1G27400 No alias Ribosomal protein L22p/L17e family protein 0.13 OrthoFinder output from all 47 species
AT1G67430 No alias Ribosomal protein L22p/L17e family protein 0.18 OrthoFinder output from all 47 species
Aev_g23375 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g34478 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Aop_g07938 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g49076 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Azfi_s0243.g059889 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Azfi_s0467.g072815 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Azfi_s0599.g078872 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Azfi_s2217.g109896 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.02G040500.1 Ceric.02G040500 component *(uL22) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Ceric.36G028400.1 Ceric.36G028400 component *(uL22) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001215.8 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
Cre13.g568900 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder output from all 47 species
Dac_g15760 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Dac_g23579 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dac_g25427 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g32267 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g32685 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Dcu_g43058 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dde_g10623 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01008528001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder output from all 47 species
GSVIVT01010449001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
GSVIVT01010450001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.21 OrthoFinder output from all 47 species
LOC_Os08g41810.1 LOC_Os08g41810 component RPL17 of LSU proteome component 0.14 OrthoFinder output from all 47 species
LOC_Os09g08430.1 LOC_Os09g08430 component RPL17 of LSU proteome component 0.09 OrthoFinder output from all 47 species
Len_g18743 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g00640 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_10430182g0010 No alias component RPL17 of LSU proteome component 0.1 OrthoFinder output from all 47 species
MA_64923g0010 No alias component RPL17 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Mp1g10230.1 No alias component RPL17 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Nbi_g03330 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g27595 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g39286 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g58342 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c11_5840V3.1 Pp3c11_5840 Ribosomal protein L22p/L17e family protein 0.14 OrthoFinder output from all 47 species
Pp3c1_6650V3.1 Pp3c1_6650 Ribosomal protein L22p/L17e family protein 0.09 OrthoFinder output from all 47 species
Ppi_g07930 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g26817 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g27245 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021928 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g00835 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g15137 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Sam_g44519 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Solyc03g111230.4.1 Solyc03g111230 component RPL17 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Solyc06g071870.3.1 Solyc06g071870 component RPL17 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Solyc06g071880.4.1 Solyc06g071880 component RPL17 of LSU proteome component 0.09 OrthoFinder output from all 47 species
Spa_g12589 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Spa_g15052 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Spa_g51098 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Tin_g04902 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Tin_g05389 No alias component *(uL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e003661_P001 Zm00001e003661 component RPL17 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Zm00001e021953_P003 Zm00001e021953 component RPL17 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Zm00001e026882_P002 Zm00001e026882 component RPL17 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Zm00001e031261_P001 Zm00001e031261 component RPL17 of LSU proteome component 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001063 Ribosomal_L22 17 152
No external refs found!