Smo92242

Description : RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor

Gene families : OG0003109 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003109_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo92242
Cluster	HCCA: Cluster_90

Target	Alias	Description	ECC score	Gene Family Method
AT4G02990	No alias	Mitochondrial transcription termination factor family protein	0.04	OrthoFinder output from all 47 species
GSVIVT01011061001	No alias	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
LOC_Os02g54200.1	LOC_Os02g54200	transcription factor (mTERF). mTERF mitochondrial RNA...	0.02	OrthoFinder output from all 47 species
LOC_Os05g33500.1	LOC_Os05g33500	transcription factor (mTERF). mTERF4 plastidial RNA...	0.04	OrthoFinder output from all 47 species
Mp1g22560.1	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Nbi_g02415	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g17301	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g14962	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e027106_P001	Zm00001e027106	transcription factor (mTERF). mTERF4 plastidial RNA...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003690	MTERF	131	440

External Links

No external refs found!