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  5. Smo91379

Smo91379


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SPF30 pre-mRNA splicing factor


Gene families : OG0003854 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003854_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo91379

Target Alias Description ECC score Gene Family Method Actions
Als_g47565 No alias scaffold component of spliceosomal snRNP assembly... 0.05 OrthoFinder output from all 47 species
Cba_g57304 No alias scaffold component of spliceosomal snRNP assembly... 0.03 OrthoFinder output from all 47 species
Ceric.08G067100.1 Ceric.08G067100 scaffold component of spliceosomal snRNP assembly... 0.03 OrthoFinder output from all 47 species
Dcu_g14213 No alias scaffold component of spliceosomal snRNP assembly... 0.03 OrthoFinder output from all 47 species
LOC_Os08g01840.1 LOC_Os08g01840 pre-mRNA splicing factor (SPF30) 0.02 OrthoFinder output from all 47 species
Msp_g07303 No alias scaffold component of spliceosomal snRNP assembly... 0.03 OrthoFinder output from all 47 species
Pir_g14659 No alias scaffold component of spliceosomal snRNP assembly... 0.03 OrthoFinder output from all 47 species
Zm00001e021874_P004 Zm00001e021874 pre-mRNA splicing factor (SPF30) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
InterPro domains Description Start Stop
IPR010304 SMN_Tudor 3 67
No external refs found!