Smo90666 (PUB39)

Aliases : PUB39

Description : U-box domain-containing protein 38 OS=Arabidopsis thaliana

Gene families : OG0004266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004266_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo90666

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00240140	evm_27.TU.AmTr_v1...	U-box domain-containing protein 4 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AT3G47820	PUB39	PLANT U-BOX 39	0.03	OrthoFinder output from all 47 species
AT5G65200	PUB38, ATPUB38	plant U-box 38	0.02	OrthoFinder output from all 47 species
Ala_g10271	No alias	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g29023	PUB38, ATPUB38	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0003.g007764	PUB39	U-Box-group-II E3 ubiquitin ligase & original...	0.03	OrthoFinder output from all 47 species
Cba_g57958	PUB39	U-Box-group-II E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.02G042800.1	ATPUB45, PUB45,...	U-Box-group-II E3 ubiquitin ligase & original...	0.03	OrthoFinder output from all 47 species
Ceric.02G044300.1	ATPUB45, PUB45,...	U-Box-group-II E3 ubiquitin ligase & original...	0.04	OrthoFinder output from all 47 species
Ceric.29G047200.1	PUB39, Ceric.29G047200	U-Box-group-II E3 ubiquitin ligase & original...	0.03	OrthoFinder output from all 47 species
Dac_g08018	PUB39	U-Box-group-II E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g40033	PUB38, ATPUB38	U-Box-group-II E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g03795	PUB39	U-Box-group-II E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Gb_16859	PUB38, ATPUB38	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
LOC_Os06g13080.1	PUB39, LOC_Os06g13080	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Lfl_g02186	PUB38, ATPUB38	U-Box-group-II E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Msp_g15300	No alias	U-Box-group-II E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g12203	No alias	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001736	PUB39	U-Box-group-II E3 ubiquitin ligase & original...	0.04	OrthoFinder output from all 47 species
Sam_g07889	No alias	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g15402	PUB38, ATPUB38	U-Box-group-II E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	HCCA
MF	GO:0008455	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	IEP	HCCA
BP	GO:0008593	regulation of Notch signaling pathway	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0009967	positive regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0010647	positive regulation of cell communication	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0023056	positive regulation of signaling	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0045747	positive regulation of Notch signaling pathway	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0048584	positive regulation of response to stimulus	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	39	106

External Links

No external refs found!

Smo90666 (PUB39)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation