Smo85179 (ATMSH2, MSH2)

Aliases : ATMSH2, MSH2

Description : DNA damage response.DNA repair mechanisms.mismatch repair (MMR).MSH2-x mismatch repair heterodimers.MSH2 component

Gene families : OG0004193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004193_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo85179

Target	Alias	Description	ECC score	Gene Family Method
Ceric.01G010000.1	ATMSH2, MSH2,...	component *(MSH2) of MSH2-x mismatch repair heterodimers...	0.02	OrthoFinder output from all 47 species
GSVIVT01008235001	ATMSH2, MSH2	DNA damage response.DNA repair mechanisms.mismatch...	0.05	OrthoFinder output from all 47 species
Lfl_g38989	ATMSH2, MSH2	component *(MSH2) of MSH2-x mismatch repair heterodimers...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0016763	pentosyltransferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000432	DNA_mismatch_repair_MutS_C	663	864

External Links

No external refs found!