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  5. Smo80688

Smo80688 (VCL1, EMB258, MAN)


Aliases : VCL1, EMB258, MAN

Description : Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS16/VCL1 component


Gene families : OG0004533 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004533_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo80688

Target Alias Description ECC score Gene Family Method Actions
AT2G38020 VCL1, EMB258, MAN vacuoleless1 (VCL1) 0.03 OrthoFinder output from all 47 species
Aev_g06149 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Aop_g08601 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Dcu_g04890 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
GSVIVT01020844001 VCL1, EMB258, MAN Vesicle trafficking.target membrane... 0.03 OrthoFinder output from all 47 species
Gb_09954 VCL1, EMB258, MAN component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes 0.05 OrthoFinder output from all 47 species
LOC_Os01g47650.1 VCL1, EMB258,... component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes 0.03 OrthoFinder output from all 47 species
Lfl_g10179 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Sam_g25104 No alias component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Solyc07g056220.3.1 VCL1, EMB258,... component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes 0.03 OrthoFinder output from all 47 species
Zm00001e028014_P001 VCL1, EMB258,... component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008373 sialyltransferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
InterPro domains Description Start Stop
IPR006925 Vps16_C 504 814
No external refs found!