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  5. Smo78344

Smo78344


Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.Prp17 component


Gene families : OG0006597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006597_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo78344
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
Als_g03805 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Aob_g02152 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.05 OrthoFinder output from all 47 species
Cba_g03265 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Ceric.05G062500.1 Ceric.05G062500 substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000663.18 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000663.19 No alias No description available 0.03 OrthoFinder output from all 47 species
Cre04.g226450 No alias RNA processing.RNA splicing.spliceosome-associated... 0.06 OrthoFinder output from all 47 species
Dac_g06482 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Dcu_g08213 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.04 OrthoFinder output from all 47 species
GSVIVT01020240001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.05 OrthoFinder output from all 47 species
Lfl_g16015 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
MA_10432915g0010 No alias component Prp17 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
Mp1g17450.1 No alias component Prp17 of non-snRNP MOS4-associated complex 0.04 OrthoFinder output from all 47 species
Ppi_g04570 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015163 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.04 OrthoFinder output from all 47 species
Sam_g08137 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.05 OrthoFinder output from all 47 species
Solyc02g078970.4.1 Solyc02g078970 component Prp17 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
Tin_g01996 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquiTin... 0.03 OrthoFinder output from all 47 species
Zm00001e001921_P002 Zm00001e001921 component Prp17 of non-snRNP MOS4-associated complex 0.06 OrthoFinder output from all 47 species
Zm00001e038006_P002 Zm00001e038006 component Prp17 of non-snRNP MOS4-associated complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 246 284
No external refs found!