Smo75554

Description : RNA processing.RNA modification.pseudouridylation.TruB-type tRNA pseudouridine synthase

Gene families : OG0003765 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003765_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo75554

Target	Alias	Description	ECC score	Gene Family Method
AT5G14460	No alias	Pseudouridine synthase family protein	0.06	OrthoFinder output from all 47 species
Ala_g09240	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Aop_g12048	No alias	TruB-type tRNA pseudouridine synthase & original...	0.02	OrthoFinder output from all 47 species
Ceric.07G028400.1	Ceric.07G028400	TruB-type tRNA pseudouridine synthase & original...	0.02	OrthoFinder output from all 47 species
Cre16.g690250	No alias	RNA processing.RNA...	0.02	OrthoFinder output from all 47 species
GSVIVT01032383001	No alias	RNA processing.RNA...	0.05	OrthoFinder output from all 47 species
Len_g31733	No alias	TruB-type tRNA pseudouridine synthase & original...	0.05	OrthoFinder output from all 47 species
Mp5g11570.1	No alias	tRNA pseudouridine synthase (TruB)	0.03	OrthoFinder output from all 47 species
Nbi_g34525	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Ore_g25312	No alias	TruB-type tRNA pseudouridine synthase & original...	0.05	OrthoFinder output from all 47 species
Sam_g26745	No alias	TruB-type tRNA pseudouridine synthase & original...	0.02	OrthoFinder output from all 47 species
Solyc02g093460.4.1	Solyc02g093460	tRNA pseudouridine synthase (TruB)	0.06	OrthoFinder output from all 47 species
Spa_g51764	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Zm00001e029672_P001	Zm00001e029672	tRNA pseudouridine synthase (TruB)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002501	PsdUridine_synth_N	213	363

External Links

No external refs found!

Smo75554

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation