LOC_Os03g10420.1


Description : Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana (sp|q9zvx5|pp156_arath : 466.0)


Gene families : OG_01_0015462 (Archaeplastida) Phylogenetic Tree(s): OG_01_0015462_tree ,
OG_02_0015310 (LandPlants) Phylogenetic Tree(s): OG_02_0015310_tree ,
OG_03_0015003 (SeedPlants) Phylogenetic Tree(s): OG_03_0015003_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g10420.1
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00236190 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g63330... 0.03 Archaeplastida
Zm00001e000760_P001 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.07 Archaeplastida
AMTR_s00023p00075180 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g16880... 0.02 LandPlants
AMTR_s00041p00236190 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g63330... 0.03 LandPlants
Zm00001e000760_P001 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.06 LandPlants
AMTR_s00041p00236190 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g63330... 0.02 SeedPlants
Zm00001e000760_P001 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.05 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 455 478
IPR002885 Pentatricopeptide_repeat 241 290
IPR002885 Pentatricopeptide_repeat 347 396
IPR002885 Pentatricopeptide_repeat 628 675
IPR002885 Pentatricopeptide_repeat 740 781
IPR002885 Pentatricopeptide_repeat 487 536
IPR002885 Pentatricopeptide_repeat 557 605
IPR002885 Pentatricopeptide_repeat 308 340
IPR002885 Pentatricopeptide_repeat 414 446
No external refs found!