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  5. Smo66840

Smo66840


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.ITS1 rRNA removal.BRX1 assembly factor


Gene families : OG0005675 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005675_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo66840

Target Alias Description ECC score Gene Family Method Actions
AT1G52930 No alias Ribosomal RNA processing Brix domain protein 0.07 OrthoFinder output from all 47 species
AT3G15460 No alias Ribosomal RNA processing Brix domain protein 0.05 OrthoFinder output from all 47 species
Adi_g045878 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
Aop_g02466 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
Azfi_s0076.g037831 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001206.16 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Cre02.g095400 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 47 species
GSVIVT01028448001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Gb_30311 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.03 OrthoFinder output from all 47 species
LOC_Os02g37870.1 LOC_Os02g37870 BRX1 assembly factor involved in ITS1 rRNA removal 0.02 OrthoFinder output from all 47 species
Len_g16692 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
Mp4g04670.1 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.02 OrthoFinder output from all 47 species
Sam_g14955 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
Solyc04g016380.3.1 Solyc04g016380 BRX1 assembly factor involved in ITS1 rRNA removal 0.03 OrthoFinder output from all 47 species
Zm00001e014980_P002 Zm00001e014980 BRX1 assembly factor involved in ITS1 rRNA removal 0.02 OrthoFinder output from all 47 species
Zm00001e022842_P003 Zm00001e022842 BRX1 assembly factor involved in ITS1 rRNA removal 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007109 Brix 41 229
No external refs found!