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  5. Smo52692

Smo52692


Description : Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana


Gene families : OG0006414 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006414_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo52692

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00208640 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g10690... 0.06 OrthoFinder output from all 47 species
Als_g01812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007615 No alias not classified & original description: CDS=350-1960 0.04 OrthoFinder output from all 47 species
Cba_g10087 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g18278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os09g26190.1 LOC_Os09g26190 Pentatricopeptide repeat-containing protein At5g10690... 0.03 OrthoFinder output from all 47 species
Lfl_g35563 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Mp1g06100.1 No alias Pentatricopeptide repeat-containing protein At5g10690... 0.04 OrthoFinder output from all 47 species
Ore_g20397 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pnu_g18420 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020562 No alias not classified & original description: CDS=129-2003 0.03 OrthoFinder output from all 47 species
Sam_g19413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc08g069010.4.1 Solyc08g069010 Pentatricopeptide repeat-containing protein At5g10690... 0.03 OrthoFinder output from all 47 species
Zm00001e009851_P003 Zm00001e009851 Pentatricopeptide repeat-containing protein At5g10690... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 53 81
No external refs found!