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  5. Smo51852

Smo51852 (VIM1, ORTH2)


Aliases : VIM1, ORTH2

Description : E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana


Gene families : OG0003058 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003058_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Smo51852

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00085910 VIM1, ORTH2,... E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT4G08590 ORTHL, ORL1, VIM6 ORTHRUS-like 0.02 OrthoFinder output from all 47 species
Azfi_s0170.g055617 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.03 OrthoFinder output from all 47 species
Ceric.02G085800.1 VIM1, ORTH2,... regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001024.15 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre03.g163850 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dcu_g08278 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.05 OrthoFinder output from all 47 species
Len_g53933 VIM5, ORTH3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27656 No alias regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.03 OrthoFinder output from all 47 species
Sam_g40416 No alias regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.03 OrthoFinder output from all 47 species
Zm00001e027679_P001 VIM1, ORTH2,... E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e029714_P002 VIM1, ORTH2,... E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003105 SRA_YDG 247 394
No external refs found!