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Smo50132 (HVT1, ATVT-1)


Aliases : HVT1, ATVT-1

Description : DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana


Gene families : OG0005875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo50132
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
Adi_g089369 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10871 HVT1, ATVT-1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g04487 HVT1, ATVT-1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g16503 HVT1, ATVT-1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.16G053600.1 HVT1, ATVT-1,... not classified & original description: pacid=50590253... 0.04 OrthoFinder output from all 47 species
GSVIVT01020822001 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Lfl_g02414 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g44296 HVT1, ATVT-1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g19921 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e028983_P004 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 722 815
No external refs found!