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  5. Smo45172

Smo45172 (SVR1)


Aliases : SVR1

Description : RNA processing.RNA modification.pseudouridylation.RsuA-type rRNA pseudouridine synthase


Gene families : OG0003742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003742_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo45172
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
Cba_g12885 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
Gb_12891 SVR1 rRNA pseudouridine synthase (RsuA) 0.04 OrthoFinder output from all 47 species
Ore_g34913 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
Pnu_g06316 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0123.g021502 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.04 OrthoFinder output from all 47 species
Zm00001e000423_P001 SVR1, Zm00001e000423 rRNA pseudouridine synthase (RsuA) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 20 62
No external refs found!