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  5. Smo449156

Smo449156 (GTA02, GTA2)


Aliases : GTA02, GTA2

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.SPT4/5 transcription elongation factor complex.SPT5 component


Gene families : OG0002736 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002736_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo449156
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AT5G04290 SPT5L, KTF1 kow domain-containing transcription factor 1 0.02 OrthoFinder output from all 47 species
Ala_g11309 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
Als_g05130 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
Aop_g07106 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.05 OrthoFinder output from all 47 species
Azfi_s0078.g038202 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
Ceric.26G072300.1 GTA02, GTA2,... component *(SPT5) of SPT4/5 transcription elongation... 0.04 OrthoFinder output from all 47 species
Dcu_g08962 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.04 OrthoFinder output from all 47 species
Dde_g07477 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.02 OrthoFinder output from all 47 species
Ehy_g20488 GTA02, GTA2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010022001 GTA02, GTA2 RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
GSVIVT01016203001 SPT5L, KTF1 Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
LOC_Os06g10620.1 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.02 OrthoFinder output from all 47 species
Len_g12137 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.05 OrthoFinder output from all 47 species
Lfl_g05703 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.05 OrthoFinder output from all 47 species
MA_10434986g0010 GTA02, GTA2 RNA polymerase-V auxiliary factor (KTF1/SPT5L).... 0.04 OrthoFinder output from all 47 species
Ore_g19192 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.04 OrthoFinder output from all 47 species
Pir_g18253 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.05 OrthoFinder output from all 47 species
Ppi_g52300 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
Solyc04g064700.4.1 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.03 OrthoFinder output from all 47 species
Solyc11g008150.3.1 SPT5L, KTF1,... RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.02 OrthoFinder output from all 47 species
Spa_g04271 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
Tin_g41245 GTA02, GTA2 component *(SF3B2) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e027389_P004 SPT5L, KTF1,... RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.02 OrthoFinder output from all 47 species
Zm00001e030789_P001 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.03 OrthoFinder output from all 47 species
Zm00001e036210_P001 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
MF GO:1990380 K48-linked deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR022581 Spt5_N 77 164
No external refs found!