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  5. Smo447382

Smo447382


Description : Cell wall.pectin.modification and degradation.pectin acetylesterase


Gene families : OG0000637 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000637_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo447382

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00266820 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectin... 0.05 OrthoFinder output from all 47 species
Aob_g22603 No alias pectin acetylesterase *(PAE) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0374.g067233 No alias not classified & original description: CDS=115-789 0.04 OrthoFinder output from all 47 species
GSVIVT01036914001 No alias Cell wall.pectin.modification and degradation.pectin... 0.03 OrthoFinder output from all 47 species
Gb_28230 No alias Pectin acetylesterase 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os01g66850.1 LOC_Os01g66850 pectin acetylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os10g40290.1 LOC_Os10g40290 Pectin acetylesterase 9 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g13795 No alias pectin acetylesterase *(PAE) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52027 No alias pectin acetylesterase *(PAE) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e028575_P002 Zm00001e028575 pectin acetylesterase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006952 defense response IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP HCCA
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP HCCA
InterPro domains Description Start Stop
IPR004963 PAE/NOTUM 12 360
No external refs found!