Smo446684 (VIP4)

Aliases : VIP4

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.PAF1C transcription initiation and elongation complex.VIP4/LEO1 component

Gene families : OG0004350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004350_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo446684

Target	Alias	Description	ECC score	Gene Family Method
AT5G61150	VIP4	leo1-like family protein	0.02	OrthoFinder output from all 47 species
Aev_g05463	VIP4	component *(VIP4/LEO1) of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
LOC_Os07g01880.1	VIP4, LOC_Os07g01880	component VIP4/LEO1 of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
Zm00001e011566_P001	VIP4, Zm00001e011566	component VIP4/LEO1 of PAF1C transcription initiation...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	None	Extended
BP	GO:0006368	transcription elongation by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007149	Leo1	224	381

External Links

No external refs found!

Smo446684 (VIP4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation