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  5. LOC_Os03g08620.1

LOC_Os03g08620.1


Description : transcription factor (REM)


Gene families : OG_01_0000741 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000741_tree ,
OG_02_0001199 (LandPlants) Phylogenetic Tree(s): OG_02_0001199_tree ,
OG_03_0001296 (SeedPlants) Phylogenetic Tree(s): OG_03_0001296_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g08620.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00115450 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
AT5G42700 No alias AP2/B3-like transcriptional factor family protein 0.07 Archaeplastida
AT5G58280 No alias AP2/B3-like transcriptional factor family protein 0.13 Archaeplastida
GSVIVT01009519001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
GSVIVT01022143001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
GSVIVT01031761001 No alias RNA biosynthesis.transcriptional activation.B3... 0.08 Archaeplastida
Gb_35990 No alias transcription factor (REM) 0.11 Archaeplastida
MA_10430774g0010 No alias No annotation 0.04 Archaeplastida
MA_10433064g0010 No alias transcription factor (REM) 0.06 Archaeplastida
MA_430451g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_59943g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Mp2g08790.1 No alias transcription factor (REM) 0.08 Archaeplastida
Pp3c14_19410V3.1 No alias AP2/B3-like transcriptional factor family protein 0.04 Archaeplastida
Pp3c17_16150V3.1 No alias AP2/B3-like transcriptional factor family protein 0.04 Archaeplastida
Pp3c1_15410V3.1 No alias AP2/B3-like transcriptional factor family protein 0.04 Archaeplastida
Pp3c7_12680V3.1 No alias AP2/B3-like transcriptional factor family protein 0.02 Archaeplastida
Pp3c7_26690V3.1 No alias AP2/B3-like transcriptional factor family protein 0.02 Archaeplastida
Smo413242 No alias No description available 0.06 Archaeplastida
Smo424732 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
Solyc01g108130.4.1 No alias transcription factor (REM) 0.02 Archaeplastida
Solyc01g108140.4.1 No alias transcription factor (REM) 0.05 Archaeplastida
Solyc04g079130.2.1 No alias transcription factor (REM) 0.11 Archaeplastida
Solyc06g007530.2.1 No alias transcription factor (REM) 0.04 Archaeplastida
Solyc06g034140.3.1 No alias transcription factor (REM) 0.1 Archaeplastida
Zm00001e000624_P003 No alias transcription factor (REM) 0.09 Archaeplastida
Zm00001e020584_P001 No alias transcription factor (REM) 0.09 Archaeplastida
Zm00001e040028_P004 No alias transcription factor (REM) 0.16 Archaeplastida
AMTR_s00077p00151100 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.01 LandPlants
AT5G42700 No alias AP2/B3-like transcriptional factor family protein 0.04 LandPlants
AT5G58280 No alias AP2/B3-like transcriptional factor family protein 0.12 LandPlants
GSVIVT01009519001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 LandPlants
GSVIVT01031761001 No alias RNA biosynthesis.transcriptional activation.B3... 0.06 LandPlants
Gb_07025 No alias transcription factor (REM) 0.02 LandPlants
Gb_35990 No alias transcription factor (REM) 0.1 LandPlants
MA_10433064g0010 No alias transcription factor (REM) 0.05 LandPlants
MA_59943g0010 No alias no hits & (original description: none) 0.03 LandPlants
Mp2g08790.1 No alias transcription factor (REM) 0.08 LandPlants
Pp3c14_19410V3.1 No alias AP2/B3-like transcriptional factor family protein 0.03 LandPlants
Pp3c17_16150V3.1 No alias AP2/B3-like transcriptional factor family protein 0.05 LandPlants
Smo424732 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 LandPlants
Solyc01g108140.4.1 No alias transcription factor (REM) 0.03 LandPlants
Solyc04g079130.2.1 No alias transcription factor (REM) 0.1 LandPlants
Solyc06g007530.2.1 No alias transcription factor (REM) 0.04 LandPlants
Zm00001e000624_P003 No alias transcription factor (REM) 0.07 LandPlants
Zm00001e020584_P001 No alias transcription factor (REM) 0.08 LandPlants
Zm00001e031956_P001 No alias transcription factor (REM) 0.02 LandPlants
Zm00001e040028_P004 No alias transcription factor (REM) 0.14 LandPlants
AMTR_s00077p00151100 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.01 SeedPlants
AT5G42700 No alias AP2/B3-like transcriptional factor family protein 0.03 SeedPlants
AT5G58280 No alias AP2/B3-like transcriptional factor family protein 0.11 SeedPlants
GSVIVT01009519001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 SeedPlants
GSVIVT01031761001 No alias RNA biosynthesis.transcriptional activation.B3... 0.05 SeedPlants
Gb_07025 No alias transcription factor (REM) 0.02 SeedPlants
Gb_35990 No alias transcription factor (REM) 0.1 SeedPlants
MA_10433064g0010 No alias transcription factor (REM) 0.05 SeedPlants
MA_59943g0010 No alias no hits & (original description: none) 0.03 SeedPlants
Solyc01g108140.4.1 No alias transcription factor (REM) 0.03 SeedPlants
Solyc04g079130.2.1 No alias transcription factor (REM) 0.08 SeedPlants
Solyc06g007530.2.1 No alias transcription factor (REM) 0.04 SeedPlants
Zm00001e000624_P003 No alias transcription factor (REM) 0.07 SeedPlants
Zm00001e020584_P001 No alias transcription factor (REM) 0.07 SeedPlants
Zm00001e031956_P001 No alias transcription factor (REM) 0.02 SeedPlants
Zm00001e040028_P004 No alias transcription factor (REM) 0.12 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 137 227
No external refs found!