Smo442197 (ATDSS1(V), DSS1(V))

Aliases : ATDSS1(V), DSS1(V)

Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.DSS1/Sem1 component

Gene families : OG0004437 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004437_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo442197
Cluster	HCCA: Cluster_49

Target	Alias	Description	ECC score	Gene Family Method
AT1G64750	ATDSS1(I), DSS1(I)	deletion of SUV3 suppressor 1(I)	0.02	OrthoFinder output from all 47 species
Adi_g025049	ATDSS1(V), DSS1(V)	regulatory component *(DSS1/Sem1) of TREX-2 mRNP...	0.02	OrthoFinder output from all 47 species
Adi_g126718	ATDSS1(V), DSS1(V)	regulatory component *(DSS1/Sem1) of TREX-2 mRNP...	0.03	OrthoFinder output from all 47 species
Cba_g35361	ATDSS1(V), DSS1(V)	regulatory component *(DSS1/Sem1) of TREX-2 mRNP...	0.02	OrthoFinder output from all 47 species
Ceric.12G057700.1	ATDSS1(V),...	regulatory component *(DSS1/Sem1) of TREX-2 mRNP...	0.02	OrthoFinder output from all 47 species
Cre02.g095093	No alias	RNA processing.messenger ribonucleoprotein particle...	0.03	OrthoFinder output from all 47 species
Cre06.g263750	No alias	RNA processing.messenger ribonucleoprotein particle...	0.05	OrthoFinder output from all 47 species
Gb_00706	No alias	component DSS1/Sem1 of TREX-2 mRNP trafficking complex	0.02	OrthoFinder output from all 47 species
Gb_39668	No alias	component DSS1/Sem1 of TREX-2 mRNP trafficking complex	0.05	OrthoFinder output from all 47 species
Mp2g25520.1	No alias	component DSS1/Sem1 of TREX-2 mRNP trafficking complex	0.03	OrthoFinder output from all 47 species
Pp3c23_6370V3.1	Pp3c23_6370	No annotation	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006405	RNA export from nucleus	None	Extended
BP	GO:0006406	mRNA export from nucleus	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0051028	mRNA transport	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007834	DSS1_SEM1	14	70

External Links

No external refs found!