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Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.ZC11A component
Gene families : OG0001116 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001116_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo441325 | |
| Cluster | HCCA: Cluster_82 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Ala_g07137 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g14554 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g62748 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g11153 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g09712 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene15363.t1 | Aspi01Gene15363 | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene53650.t1 | Aspi01Gene53650 | regulatory protein *(ZC11A) of mRNA export & original... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g13222 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.12G089800.1 | Ceric.12G089800 | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.21G028800.1 | Ceric.21G028800 | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g29062 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g31773 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g24147 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g04002 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g13498 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01010243001 | No alias | RNA processing.messenger ribonucleoprotein particle... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_10712 | No alias | C3H zinc finger transcription factor. regulatory... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os04g57600.1 | LOC_Os04g57600 | C3H zinc finger transcription factor. regulatory... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g09818 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g04919 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g04961 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| MA_17019g0010 | No alias | C3H zinc finger transcription factor | 0.06 | OrthoFinder output from all 47 species | |
| Mp2g02990.1 | No alias | C3H zinc finger transcription factor. regulatory... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g06797 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g13228 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g17064 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g17489 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g28422 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g37675 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g09783 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g30352 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g10280 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0019.g007865 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0021.g008491 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0220.g026153 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g09314 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g17521 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g27203 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc04g008550.4.1 | Solyc04g008550 | C3H zinc finger transcription factor. regulatory... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g17319 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g30365 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g48975 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g49982 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g02840 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e023520_P001 | Zm00001e023520 | C3H zinc finger transcription factor. regulatory... | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e041908_P001 | Zm00001e041908 | C3H zinc finger transcription factor. regulatory... | 0.11 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003682 | chromatin binding | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0006508 | proteolysis | IEP | HCCA |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
| BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
| BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |