1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g07800.1

LOC_Os03g07800.1


Description : mRNA-binding regulatory factor (RBP45/47)


Gene families : OG_01_0000444 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000444_tree ,
OG_02_0000471 (LandPlants) Phylogenetic Tree(s): OG_02_0000471_tree ,
OG_03_0000318 (SeedPlants) Phylogenetic Tree(s): OG_03_0000318_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g07800.1
Cluster HCCA: Cluster_353

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00247520 evm_27.TU.AmTr_v1... Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.02 Archaeplastida
AT3G19130 ATRBP47B, RBP47B RNA-binding protein 47B 0.02 Archaeplastida
Cre16.g652900 No alias Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01037634001 No alias Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia 0.02 Archaeplastida
MA_10433182g0010 No alias Polyadenylate-binding protein RBP47C OS=Arabidopsis... 0.02 Archaeplastida
Pp3c12_10910V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Pp3c12_10960V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Pp3c4_13300V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Smo80061 No alias Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.04 Archaeplastida
Solyc03g031720.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 Archaeplastida
Solyc10g005260.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 Archaeplastida
Zm00001e006878_P004 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e009967_P001 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 Archaeplastida
Zm00001e022780_P001 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 Archaeplastida
AMTR_s00022p00247520 evm_27.TU.AmTr_v1... Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.02 LandPlants
AT3G19130 ATRBP47B, RBP47B RNA-binding protein 47B 0.02 LandPlants
GSVIVT01025280001 No alias Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.02 LandPlants
Pp3c12_10910V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 LandPlants
Pp3c12_10960V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 LandPlants
Pp3c4_13300V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 LandPlants
Smo418663 No alias Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.01 LandPlants
Smo80061 No alias Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.04 LandPlants
Solyc03g031720.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 LandPlants
Solyc10g005260.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 LandPlants
Zm00001e012505_P001 No alias mRNA-binding regulatory factor (RBP45/47) 0.01 LandPlants
Zm00001e022780_P001 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 LandPlants
AMTR_s00022p00247520 evm_27.TU.AmTr_v1... Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.02 SeedPlants
AT3G19130 ATRBP47B, RBP47B RNA-binding protein 47B 0.02 SeedPlants
AT5G54900 ATRBP45A, RBP45A RNA-binding protein 45A 0.02 SeedPlants
GSVIVT01025280001 No alias Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.02 SeedPlants
Solyc03g031720.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 SeedPlants
Solyc10g005260.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 SeedPlants
Zm00001e012505_P001 No alias mRNA-binding regulatory factor (RBP45/47) 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 111 180
IPR000504 RRM_dom 18 86
IPR000504 RRM_dom 229 292
No external refs found!