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Description : RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF2 component
Gene families : OG0003692 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003692_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Aev_g28134 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g20588 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.05 | OrthoFinder output from all 47 species | |
| Als_g03890 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g06089 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene45459.t1 | Aspi01Gene45459 | component *(UPF2) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0287.g063161 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.01G002200.1 | Ceric.01G002200 | component *(UPF2) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g03185 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01016353001 | No alias | RNA processing.RNA quality control Exon Junction complex... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os02g42040.1 | LOC_Os02g42040 | component UPF2 of RNA quality control Exon Junction complex | 0.02 | OrthoFinder output from all 47 species | |
| Len_g19045 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g22211 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g06800 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g14884 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g36558 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e023044_P004 | Zm00001e023044 | component UPF2 of RNA quality control Exon Junction complex | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| MF | GO:0030246 | carbohydrate binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003890 | MIF4G-like_typ-3 | 681 | 874 |
| No external refs found! |