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  5. Smo438805

Smo438805 (PTAC10, PDE312)


Aliases : PTAC10, PDE312

Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component


Gene families : OG0006411 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo438805
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00203240 PTAC10, PDE312,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 OrthoFinder output from all 47 species
AMTR_s00354p00009120 PTAC10, PDE312,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.08 OrthoFinder output from all 47 species
AT3G48500 PTAC10, PDE312 Nucleic acid-binding, OB-fold-like protein 0.06 OrthoFinder output from all 47 species
Adi_g052271 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.08 OrthoFinder output from all 47 species
Ala_g07933 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.02 OrthoFinder output from all 47 species
Azfi_s0353.g066638 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.05 OrthoFinder output from all 47 species
Ceric.02G035300.1 PTAC10, PDE312,... cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.05 OrthoFinder output from all 47 species
Dcu_g13818 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.03 OrthoFinder output from all 47 species
GSVIVT01008490001 PTAC10, PDE312 RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
Gb_30753 PTAC10, PDE312 PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.05 OrthoFinder output from all 47 species
Gb_30755 PTAC10, PDE312 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Gb_30756 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os01g67570.1 PTAC10, PDE312,... PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species
Lfl_g03268 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.03 OrthoFinder output from all 47 species
MA_10428299g0010 PTAC10, PDE312 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10435142g0010 PTAC10, PDE312 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_14025g0020 PTAC10, PDE312 PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Mp4g08250.1 PTAC10, PDE312 PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.07 OrthoFinder output from all 47 species
Nbi_g28130 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.04 OrthoFinder output from all 47 species
Ppi_g15491 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0069.g016617 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.06 OrthoFinder output from all 47 species
Solyc03g111050.3.1 PTAC10, PDE312,... PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.07 OrthoFinder output from all 47 species
Spa_g12662 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.03 OrthoFinder output from all 47 species
Tin_g09197 PTAC10, PDE312 cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... 0.02 OrthoFinder output from all 47 species
Zm00001e028549_P001 PTAC10, PDE312,... PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!