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  5. Smo430901

Smo430901


Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL3 component


Gene families : OG0005291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005291_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo430901
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT2G43030 No alias Ribosomal protein L3 family protein 0.07 OrthoFinder output from all 47 species
Adi_g022051 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Adi_g022052 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ala_g05869 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Als_g10884 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aob_g03365 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aop_g26780 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Azfi_s0242.g059806 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ceric.08G072800.1 Ceric.08G072800 component *(uL3c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Cre48.g761197 No alias Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Dac_g08147 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dcu_g02623 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
GSVIVT01019355001 No alias 50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea 0.04 OrthoFinder output from all 47 species
Gb_26251 No alias component psRPL3 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
LOC_Os02g04460.1 LOC_Os02g04460 component psRPL3 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Len_g00379 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Lfl_g10299 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
MA_10432831g0010 No alias component psRPL3 of large ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Mp1g03320.1 No alias component psRPL3 of large ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Nbi_g00713 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ore_g11263 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pp3c6_28830V3.1 Pp3c6_28830 Ribosomal protein L3 family protein 0.02 OrthoFinder output from all 47 species
Ppi_g07342 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015211 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Sam_g11021 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sam_g24523 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Solyc06g051200.3.1 Solyc06g051200 component psRPL3 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Spa_g05012 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Tin_g06461 No alias component *(uL3c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 100 187
No external refs found!