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  5. Smo424732

Smo424732


Description : RNA biosynthesis.transcriptional activation.B3 superfamily.REM transcription factor


Gene families : OG0000663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000663_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo424732
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AT5G42700 No alias AP2/B3-like transcriptional factor family protein 0.05 OrthoFinder output from all 47 species
Adi_g052583 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28493 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g51859 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g25439 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g36068 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene04981.t1 Aspi01Gene04981 REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24780.t1 Aspi01Gene24780 REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61918.t1 Aspi01Gene61918 REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G084400.1 Ceric.02G084400 REM-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.07G043800.1 Ceric.07G043800 REM-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.14G017400.1 Ceric.14G017400 REM-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.35G050300.1 Ceric.35G050300 REM-type transcription factor & original description:... 0.07 OrthoFinder output from all 47 species
Dac_g15058 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g41437 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g43688 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007552001 No alias B3 domain-containing protein Os01g0905400 OS=Oryza... 0.02 OrthoFinder output from all 47 species
GSVIVT01009519001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
GSVIVT01031761001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
Gb_35990 No alias transcription factor (REM) 0.05 OrthoFinder output from all 47 species
LOC_Os03g08620.1 LOC_Os03g08620 transcription factor (REM) 0.02 OrthoFinder output from all 47 species
Len_g01795 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g55690 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g28691 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g29370 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g09553 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g36795 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g34487 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g39771 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g01929 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g11583 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14471 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14184 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48173 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g079130.2.1 Solyc04g079130 transcription factor (REM) 0.02 OrthoFinder output from all 47 species
Spa_g03459 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49592 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g56976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g00720 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11017 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29854 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000624_P003 Zm00001e000624 transcription factor (REM) 0.03 OrthoFinder output from all 47 species
Zm00001e020584_P001 Zm00001e020584 transcription factor (REM) 0.02 OrthoFinder output from all 47 species
Zm00001e040028_P004 Zm00001e040028 transcription factor (REM) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 80 169
No external refs found!