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  5. Smo420513

Smo420513


Description : U-box domain-containing protein 4 OS=Arabidopsis thaliana


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo420513
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00086p00031680 evm_27.TU.AmTr_v1... U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00153p00035720 ATPUB17, PUB17,... U-box domain-containing protein 1 OS=Medicago truncatula 0.04 OrthoFinder output from all 47 species
AT1G10560 PUB18, ATPUB18 plant U-box 18 0.02 OrthoFinder output from all 47 species
Adi_g002810 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g009234 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g017517 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g026489 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102535 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03944 PUB12, AtPUB12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06711 PUB18, ATPUB18 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g33983 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07222 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17547 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21703 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28347.t1 PUB14, ATPUB14,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0011.g012763 PUB12, AtPUB12 not classified & original description: CDS=1-549 0.01 OrthoFinder output from all 47 species
Cba_g02580 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g31838 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.13G074400.1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description:... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020943.20 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g08480 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g23493 PUB18, ATPUB18 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g23494 PUB18, ATPUB18 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g26575 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g39767 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06975 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29208 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01032778001 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula 0.02 OrthoFinder output from all 47 species
GSVIVT01036669001 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_08792 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula... 0.04 OrthoFinder output from all 47 species
Gb_10627 PUB8, B80 U-box domain-containing protein 13 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_29129 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula... 0.04 OrthoFinder output from all 47 species
Len_g47386 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10329986g0010 No alias U-box domain-containing protein 13 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Msp_g08607 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g37725 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05165 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25238 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28799 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28901 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32554 PUB12, AtPUB12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34477 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11319 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12544 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g38766 No alias E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g17953 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11362 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30846 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g30958 PUB13, ATPUB13 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005097 No alias not classified & original description: CDS=1-2154 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005301 PUB13, ATPUB13 not classified & original description: CDS=201-2096 0.02 OrthoFinder output from all 47 species
Sam_g39035 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g114160.1.1 Solyc03g114160 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Solyc11g008390.2.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Spa_g07392 PUB15 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g12131 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g24085 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25117 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54242 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10003 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e018578_P001 Zm00001e018578 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003796 lysozyme activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0061783 peptidoglycan muralytic activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 84 121
No external refs found!