Smo419725

Description : RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor

Gene families : OG0000165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000165_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo419725

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00225110	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00010p00230750	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00010p00235760	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00010p00236050	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	OrthoFinder output from all 47 species
AMTR_s00010p00236280	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AT1G21150	No alias	Mitochondrial transcription termination factor family protein	0.02	OrthoFinder output from all 47 species
AT1G62110	No alias	Mitochondrial transcription termination factor family protein	0.04	OrthoFinder output from all 47 species
AT3G46950	No alias	Mitochondrial transcription termination factor family protein	0.02	OrthoFinder output from all 47 species
AT5G23930	No alias	Mitochondrial transcription termination factor family protein	0.03	OrthoFinder output from all 47 species
Aob_g05752	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene64007.t1	Aspi01Gene64007	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g31748	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g14645	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01022213001	No alias	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
GSVIVT01036787001	No alias	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
Gb_07257	PTAC15	TAC15 cofactor of plastid-encoded RNA polymerase....	0.02	OrthoFinder output from all 47 species
Gb_26176	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
LOC_Os05g33460.2	LOC_Os05g33460	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
LOC_Os11g10040.1	LOC_Os11g10040	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
Len_g21383	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g24851	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_3151g0010	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
MA_31885g0010	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
MA_493420g0010	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
MA_92135g0010	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Mp1g21970.1	PTAC15	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Ore_g26508	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g26624	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc04g072500.1.1	Solyc04g072500	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
Zm00001e027097_P001	Zm00001e027097	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003690	MTERF	111	312

External Links

No external refs found!

Smo419725

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation