LOC_Os03g02430.1


Description : Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana (sp|q9scp4|pp279_arath : 520.0)


Gene families : OG_01_0000306 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000306_tree ,
OG_02_0001965 (LandPlants) Phylogenetic Tree(s): OG_02_0001965_tree ,
OG_03_0003421 (SeedPlants) Phylogenetic Tree(s): OG_03_0003421_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g02430.1
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
AT3G06430 EMB2750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
Cpa|evm.model.tig00001623.10 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.01 Archaeplastida
GSVIVT01017677001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.14 Archaeplastida
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 Archaeplastida
GSVIVT01038096001 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.04 Archaeplastida
Gb_00230 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 Archaeplastida
Gb_18854 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.02 Archaeplastida
Gb_36199 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.05 Archaeplastida
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.05 Archaeplastida
MA_10431478g0010 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.09 Archaeplastida
MA_12518g0010 No alias Pentatricopeptide repeat-containing protein PPR5... 0.04 Archaeplastida
MA_793801g0010 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 Archaeplastida
MA_946756g0010 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.05 Archaeplastida
Pp3c20_15110V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Pp3c8_13830V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
Pp3c8_4580V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
Smo119487 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.05 Archaeplastida
Solyc01g057200.4.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 Archaeplastida
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.08 Archaeplastida
Solyc12g098990.2.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.05 Archaeplastida
Zm00001e000106_P001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.06 Archaeplastida
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.05 Archaeplastida
Zm00001e025825_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e031052_P001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.05 Archaeplastida
AMTR_s00045p00075400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g06430,... 0.02 LandPlants
AT3G06430 EMB2750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 LandPlants
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 LandPlants
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 LandPlants
GSVIVT01017677001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.13 LandPlants
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 LandPlants
Gb_00230 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 LandPlants
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 LandPlants
MA_10431478g0010 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.09 LandPlants
MA_793801g0010 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 LandPlants
Pp3c20_15110V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
Solyc01g057200.4.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 LandPlants
Solyc12g098990.2.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.05 LandPlants
Zm00001e000106_P001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.06 LandPlants
Zm00001e031052_P001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.05 LandPlants
AMTR_s00025p00175980 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g48730,... 0.02 SeedPlants
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 SeedPlants
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 SeedPlants
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 SeedPlants
Gb_00230 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 SeedPlants
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.02 SeedPlants
MA_10431478g0010 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 SeedPlants
Solyc01g006500.4.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.02 SeedPlants
Solyc08g045780.4.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.03 SeedPlants
Zm00001e000106_P001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.06 SeedPlants
Zm00001e031052_P001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 196 225
IPR002885 Pentatricopeptide_repeat 300 349
IPR002885 Pentatricopeptide_repeat 229 277
IPR002885 Pentatricopeptide_repeat 372 417
IPR002885 Pentatricopeptide_repeat 122 171
No external refs found!