Smo414166 (ATLIG4, LIG4)

Aliases : ATLIG4, LIG4

Description : DNA damage response.DNA repair mechanisms.nonhomologous end-joining repair (NHEJ).LIG4-XRCC4 ligase complex.LIG4 DNA ligase component

Gene families : OG0003019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003019_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo414166
Cluster	HCCA: Cluster_70

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00149970	ATLIG4, LIG4,...	DNA damage response.DNA repair mechanisms.nonhomologous...	0.02	OrthoFinder output from all 47 species
Ceric.17G068500.1	ATLIG4, LIG4,...	EC_6.5 ligase forming phosphoric ester bond & original...	0.03	OrthoFinder output from all 47 species
Dcu_g05807	ATLIG4, LIG4	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR012310	DNA_ligase_ATP-dep_cent	227	437

External Links

No external refs found!

Smo414166 (ATLIG4, LIG4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation