Smo413512

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B2 component

Gene families : OG0004021 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004021_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo413512
Cluster	HCCA: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cpa\|evm.model.tig00000829.24	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	OrthoFinder output from all 47 species
Pp3c17_13490V3.1	Pp3c17_13490	proline-rich spliceosome-associated (PSP) family protein	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006568	PSP_pro-rich	152	197

External Links

No external refs found!

Smo413512

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation