LOC_Os02g58490.1


Description : RIS-Complex miRNA recruiting factor (AGO1)


Gene families : OG_01_0000124 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000124_tree ,
OG_02_0000677 (LandPlants) Phylogenetic Tree(s): OG_02_0000677_tree ,
OG_03_0000508 (SeedPlants) Phylogenetic Tree(s): OG_03_0000508_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g58490.1
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00203090 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.06 Archaeplastida
AMTR_s00008p00203230 evm_27.TU.AmTr_v1... Protein argonaute 16 OS=Oryza sativa subsp. japonica 0.04 Archaeplastida
AMTR_s00058p00069070 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.05 Archaeplastida
AMTR_s00122p00122810 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
AT1G31280 AGO2 Argonaute family protein 0.02 Archaeplastida
AT1G48410 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.04 Archaeplastida
AT2G27040 AGO4, OCP11 Argonaute family protein 0.04 Archaeplastida
AT5G43810 PNH, AGO10, ZLL Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.04 Archaeplastida
Cre16.g689647 No alias Protein argonaute 1 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01025868001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
GSVIVT01029383001 No alias Chromatin organisation.DNA methylation.canonical... 0.04 Archaeplastida
GSVIVT01031430001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
GSVIVT01037488001 No alias Chromatin organisation.DNA methylation.canonical... 0.07 Archaeplastida
Gb_34642 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
Gb_34718 No alias Protein argonaute 10 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os07g16224.1 No alias siRNA-integrating factor (AGO) 0.03 Archaeplastida
MA_10427005g0010 No alias siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.03 Archaeplastida
MA_118377g0010 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.05 Archaeplastida
MA_14457g0010 No alias Protein argonaute 4A OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_14457g0020 No alias Protein argonaute 4B OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Mp1g18110.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.03 Archaeplastida
Pp3c17_16550V3.1 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 Archaeplastida
Pp3c19_20670V3.1 No alias Argonaute family protein 0.02 Archaeplastida
Pp3c1_35770V3.1 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 Archaeplastida
Smo110151 No alias Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
Solyc01g008960.3.1 No alias siRNA-integrating factor (AGO) 0.05 Archaeplastida
Solyc03g098280.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.09 Archaeplastida
Solyc06g072300.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.1 Archaeplastida
Solyc06g073540.4.1 No alias siRNA-integrating factor (AGO) 0.03 Archaeplastida
Solyc07g049500.3.1 No alias siRNA-integrating factor (AGO) 0.08 Archaeplastida
Solyc09g082830.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.03 Archaeplastida
Zm00001e007233_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.01 Archaeplastida
Zm00001e017367_P001 No alias siRNA-integrating factor (AGO) 0.02 Archaeplastida
Zm00001e027670_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
Zm00001e029696_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
Zm00001e032609_P001 No alias siRNA-integrating factor (AGO) 0.03 Archaeplastida
Zm00001e033643_P006 No alias siRNA-integrating factor (AGO) 0.03 Archaeplastida
Zm00001e037347_P002 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.08 Archaeplastida
Zm00001e041452_P004 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.04 Archaeplastida
AT1G48410 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 LandPlants
AT2G27880 AGO5 Argonaute family protein 0.02 LandPlants
AT5G43810 PNH, AGO10, ZLL Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 LandPlants
GSVIVT01018054001 No alias Chromatin organisation.DNA methylation.canonical... 0.02 LandPlants
GSVIVT01029383001 No alias Chromatin organisation.DNA methylation.canonical... 0.04 LandPlants
GSVIVT01031430001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 LandPlants
MA_118377g0010 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.04 LandPlants
Mp1g18110.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 LandPlants
Pp3c17_16550V3.1 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 LandPlants
Pp3c1_35770V3.1 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 LandPlants
Pp3c2_4060V3.1 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.01 LandPlants
Smo110151 No alias Chromatin organisation.DNA methylation.canonical... 0.02 LandPlants
Solyc03g098280.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.09 LandPlants
Solyc06g072300.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.09 LandPlants
Solyc09g082830.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 LandPlants
Zm00001e007233_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.01 LandPlants
Zm00001e027670_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 LandPlants
Zm00001e029696_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 LandPlants
Zm00001e037347_P002 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.06 LandPlants
Zm00001e041452_P004 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.04 LandPlants
AMTR_s00044p00049370 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.01 SeedPlants
AMTR_s00122p00122810 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.01 SeedPlants
AT1G48410 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 SeedPlants
AT2G27880 AGO5 Argonaute family protein 0.02 SeedPlants
AT5G43810 PNH, AGO10, ZLL Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 SeedPlants
GSVIVT01018054001 No alias Chromatin organisation.DNA methylation.canonical... 0.02 SeedPlants
GSVIVT01029383001 No alias Chromatin organisation.DNA methylation.canonical... 0.04 SeedPlants
GSVIVT01031430001 No alias Chromatin organisation.DNA methylation.canonical... 0.02 SeedPlants
MA_118377g0010 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.03 SeedPlants
Solyc03g098280.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.09 SeedPlants
Solyc06g072300.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.09 SeedPlants
Solyc09g082830.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 SeedPlants
Zm00001e007233_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.01 SeedPlants
Zm00001e027670_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 SeedPlants
Zm00001e029696_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 SeedPlants
Zm00001e037347_P002 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.05 SeedPlants
Zm00001e041452_P004 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032474 Argonaute_N 155 289
IPR003165 Piwi 639 958
IPR014811 ArgoL1 300 348
IPR003100 PAZ_dom 355 474
IPR032472 ArgoL2 488 534
IPR032473 Argonaute_Mid_dom 545 619
No external refs found!