1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os02g57980.1

LOC_Os02g57980.1


Description : DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp. japonica (sp|q6k7r9|rh48_orysj : 1548.0)


Gene families : OG_01_0001868 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001868_tree ,
OG_02_0002062 (LandPlants) Phylogenetic Tree(s): OG_02_0002062_tree ,
OG_03_0001848 (SeedPlants) Phylogenetic Tree(s): OG_03_0001848_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g57980.1
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00261910 evm_27.TU.AmTr_v1... Probable DEAD-box ATP-dependent RNA helicase 48... 0.03 Archaeplastida
AT1G63250 No alias DEA(D/H)-box RNA helicase family protein 0.03 Archaeplastida
AT5G08610 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
Cpa|evm.model.tig00001224.23 No alias DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre16.g661900 No alias DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana 0.01 Archaeplastida
Mp7g07740.1 No alias Probable DEAD-box ATP-dependent RNA helicase 48... 0.03 Archaeplastida
Zm00001e016261_P001 No alias DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.06 Archaeplastida
Zm00001e020446_P003 No alias DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sativa... 0.03 Archaeplastida
AMTR_s00009p00261910 evm_27.TU.AmTr_v1... Probable DEAD-box ATP-dependent RNA helicase 48... 0.02 LandPlants
AT1G63250 No alias DEA(D/H)-box RNA helicase family protein 0.03 LandPlants
AT5G08610 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 LandPlants
GSVIVT01019804001 No alias DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.03 LandPlants
Mp7g07740.1 No alias Probable DEAD-box ATP-dependent RNA helicase 48... 0.02 LandPlants
Zm00001e016261_P001 No alias DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.06 LandPlants
Zm00001e037076_P003 No alias DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa... 0.02 LandPlants
AMTR_s00009p00261910 evm_27.TU.AmTr_v1... Probable DEAD-box ATP-dependent RNA helicase 48... 0.02 SeedPlants
AT1G63250 No alias DEA(D/H)-box RNA helicase family protein 0.03 SeedPlants
AT5G08610 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 SeedPlants
AT5G63630 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 SeedPlants
GSVIVT01019804001 No alias DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.03 SeedPlants
Solyc01g095740.4.1 No alias DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis... 0.03 SeedPlants
Zm00001e016261_P001 No alias DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.05 SeedPlants
Zm00001e020452_P002 No alias DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa... 0.02 SeedPlants
Zm00001e037076_P003 No alias DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 367 544
IPR001650 Helicase_C 588 694
No external refs found!