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  5. Smo407609

Smo407609 (ATMSH2, MSH2)


Aliases : ATMSH2, MSH2

Description : DNA mismatch repair protein MSH2 OS=Arabidopsis thaliana


Gene families : OG0004193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004193_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo407609

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00236950 ATMSH2, MSH2,... DNA damage response.DNA repair mechanisms.mismatch... 0.02 OrthoFinder output from all 47 species
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 0.03 OrthoFinder output from all 47 species
Als_g31821 ATMSH2, MSH2 component *(MSH2) of MSH2-x mismatch repair heterodimers... 0.05 OrthoFinder output from all 47 species
Ceric.01G010000.1 ATMSH2, MSH2,... component *(MSH2) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species
Dcu_g04076 ATMSH2, MSH2 component *(MSH2) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species
Pir_g51528 ATMSH2, MSH2 component *(MSH2) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species
Ppi_g12971 ATMSH2, MSH2 component *(MSH2) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEP HCCA
InterPro domains Description Start Stop
IPR007696 DNA_mismatch_repair_MutS_core 418 564
No external refs found!