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  5. Smo407119

Smo407119


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.ADA3 component


Gene families : OG0002109 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002109_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo407119
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00031p00010980 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
AT4G29790 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
AT5G22450 No alias unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:... 0.02 OrthoFinder output from all 47 species
Adi_g016461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g29931 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Ala_g05137 No alias component *(ADA3) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Als_g29245 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Als_g49585 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Aob_g10990 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Aob_g10991 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Azfi_s0021.g015784 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ceric.03G067900.1 Ceric.03G067900 component *(ADA3) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Ceric.34G015100.1 Ceric.34G015100 component *(ADA3) of SAGA transcription co-activator... 0.09 OrthoFinder output from all 47 species
Dcu_g46147 No alias component *(ADA3) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Ehy_g31344 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
GSVIVT01015158001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.09 OrthoFinder output from all 47 species
GSVIVT01036136001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
Gb_07255 No alias component ADA3 of SAGA transcription co-activator complex 0.04 OrthoFinder output from all 47 species
LOC_Os01g73620.1 LOC_Os01g73620 component ADA3 of SAGA transcription co-activator complex 0.08 OrthoFinder output from all 47 species
LOC_Os05g01690.1 LOC_Os05g01690 component ADA3 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
LOC_Os05g28300.1 LOC_Os05g28300 component ADA3 of SAGA transcription co-activator complex 0.05 OrthoFinder output from all 47 species
Len_g10698 No alias component *(ADA3) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Len_g15781 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Len_g35259 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Lfl_g10282 No alias component *(ADA3) of SAGA transcription co-activator... 0.08 OrthoFinder output from all 47 species
Lfl_g27993 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
MA_107341g0010 No alias component ADA3 of SAGA transcription co-activator complex 0.05 OrthoFinder output from all 47 species
Mp1g06630.1 No alias component ADA3 of SAGA transcription co-activator complex 0.06 OrthoFinder output from all 47 species
Msp_g14668 No alias component *(ADA3) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Nbi_g18247 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ore_g18819 No alias component *(ADA3) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Ore_g31628 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13632 No alias component *(ADA3) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Pir_g43188 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Pnu_g17934 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Sam_g48948 No alias component *(ADA3) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Solyc07g040980.3.1 Solyc07g040980 component ADA3 of SAGA transcription co-activator complex 0.04 OrthoFinder output from all 47 species
Solyc11g006960.2.1 Solyc11g006960 component ADA3 of SAGA transcription co-activator complex 0.07 OrthoFinder output from all 47 species
Spa_g26204 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Zm00001e018678_P002 Zm00001e018678 component ADA3 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Zm00001e027665_P001 Zm00001e027665 component ADA3 of SAGA transcription co-activator complex 0.06 OrthoFinder output from all 47 species
Zm00001e029688_P001 Zm00001e029688 component ADA3 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042579 microbody IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019340 Histone_AcTrfase_su3 871 996
No external refs found!