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  5. Smo405512

Smo405512


Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC17 component


Gene families : OG0001348 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001348_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo405512
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00183310 PTAC17,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 OrthoFinder output from all 47 species
AT1G15730 No alias Cobalamin biosynthesis CobW-like protein 0.02 OrthoFinder output from all 47 species
Adi_g057639 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Adi_g057640 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Aev_g01041 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Ala_g23339 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Aob_g01393 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.05 OrthoFinder output from all 47 species
Cba_g19694 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Cba_g33722 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g22058 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Dcu_g04708 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Ehy_g22577 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01017471001 PTAC17 RNA biosynthesis.organelle machineries.RNA polymerase... 0.06 OrthoFinder output from all 47 species
Gb_00365 PTAC17 TAC17 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Gb_13256 PTAC17 TAC17 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
LOC_Os02g55630.1 PTAC17, LOC_Os02g55630 TAC17 cofactor of plastid-encoded RNA polymerase 0.05 OrthoFinder output from all 47 species
Len_g48260 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Lfl_g01488 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.07 OrthoFinder output from all 47 species
Mp1g05690.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Msp_g12994 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Ppi_g13366 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Tin_g15394 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Zm00001e016143_P001 Zm00001e016143 TAC17 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003495 CobW/HypB/UreG_dom 90 275
No external refs found!