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Description : Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana
Gene families : OG0000390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000390_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo404483 | |
| Cluster | HCCA: Cluster_75 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G05140 | No alias | Transcription elongation factor (TFIIS) family protein | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g16447 | No alias | component *(MED26) of MEDIATOR transcription... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os07g44820.1 | LOC_Os07g44820 | component MED26 of MEDIATOR transcription co-activator complex | 0.01 | OrthoFinder output from all 47 species | |
| Msp_g13784 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g22829 | No alias | component *(MED26) of MEDIATOR transcription... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g17469 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0011.g005285 | No alias | not classified & original description: CDS=297-1337 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g29122 | No alias | component *(MED26) of MEDIATOR transcription... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc10g080930.2.1 | Solyc10g080930 | component MED26 of MEDIATOR transcription co-activator complex | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e017420_P001 | Zm00001e017420 | component MED26 of MEDIATOR transcription co-activator complex | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e027059_P003 | Zm00001e027059 | component MED26 of MEDIATOR transcription co-activator complex | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005634 | nucleus | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000287 | magnesium ion binding | IEP | HCCA |
| BP | GO:0005996 | monosaccharide metabolic process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0019321 | pentose metabolic process | IEP | HCCA |
| BP | GO:0019566 | arabinose metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| BP | GO:0046373 | L-arabinose metabolic process | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR017923 | TFIIS_N | 132 | 179 |
| No external refs found! |